Package index • creelutils

Accessing public data

These functions interact with publicly available data. The current sources include USGS and Washington DOE for streamflow data and Washington’s open data portal (data.wa.gov) for creel data.

fetch_dwg(): Download creel datasets from data.wa.gov

fetch_fishery_names(): List all available 'fishery name' values

search_fishery_name(): Find fishery names from a partial names

query_creel_website(): Query the creel website for specific combinations of data

get_fishery_data(): Obtain and format interview, catch, and effort data for sets of fishery-years

Accessing internal data

These functions interact directly with the WDFW PostgreSQL creel database, which requires proper credentials and permissions.

establish_db_con(): Establish database connection

fetch_db_table(): Query database tables

BSS tools

Functions for working with a ‘stanfit’ class object created from the rstan R package.

get_bss_settings(): Summarize priors, sampler settings, and metadata from a stanfit object

get_bss_runtime(): Summarize BSS model runtime

get_hmc_diagnostics(): Summarize HMC Diagnostics from a Stan Fit

Uploading model estimates

Also know as the extract, transform, and load (ETL) process. This group of functions works with CreelEstimates to standardize and transform model output formatting, save analysis metadata, and write catch and effort model estimates to the creel database.

process_estimates_bss(): Title

process_estimates_pe(): Title

map_data_grade(): Map datagrade ??

transform_estimates(): Transform individual model outputs into a single object

prep_export(): Prep export

json_conversion(): Convert model estimate metadata objects to json format

export_estimates(): Export creel model estimates

write_lut(): Write look-up table

write_stratum(): Write stratum

write_total(): Write Total

confirm_db_upload(): Confirm database upload

Reporting

These functions produce standardized reports for a given fishery.

render_progress_report(): Produce a creel progress report and summaries